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🚀 Automatically rebuilt derived files (#2484)
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‎_config.yml

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@@ -1947,53 +1947,6 @@ ontologies:
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- disease
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title: Epilepsy Ontology
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tracker: https://github.com/SCAI-BIO/EpilepsyOntology/issues
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- activity_status: active
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contact:
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email: [email protected]
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github: zhengj2007
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label: Jie Zheng
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orcid: 0000-0002-2999-0103
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depicted_by: https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png
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description: An ontology is developed to support Eukaryotic Pathogen, Host & Vector
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Genomics Resource (VEuPathDB; https://veupathdb.org).
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domain: organisms
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homepage: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
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id: eupath
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layout: ontology_detail
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license:
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label: CC BY 4.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
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url: http://creativecommons.org/licenses/by/4.0/
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ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
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preferredPrefix: EUPATH
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products:
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- id: eupath.owl
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ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
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publications:
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- id: https://doi.org/10.5281/zenodo.6685957
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title: Malaria study data integration and information retrieval based on OBO Foundry
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ontologies.
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repository: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
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tags:
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- functional genomics
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- population biology
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- clinical epidemiology
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- microbiomes
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title: VEuPathDB ontology
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tracker: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues
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usages:
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- description: The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen,
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Vector & Host Informatics Resources) covers both functional genomics and population
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biology.
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type: annotation and query
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user: https://veupathdb.org
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- description: The VEuPathDB ontology is used in the clinical epidemiology resources.
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type: annotation and query
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user: https://clinepidb.org
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- description: The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology
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platform for integrating, mining and analyzing microbiome experiments.
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type: annotation and query
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user: https://microbiomedb.org
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- activity_status: active
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contact:
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email: [email protected]
@@ -3023,7 +2976,7 @@ ontologies:
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method: owl2obo
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source_url: http://purl.obolibrary.org/obo/iao.owl
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contact:
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email: [email protected]
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email: [email protected]
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github: zhengj2007
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label: Jie Zheng
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orcid: 0000-0002-2999-0103
@@ -5050,7 +5003,7 @@ ontologies:
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tracker: https://github.com/OOSTT/OOSTT/issues
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- activity_status: active
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contact:
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email: [email protected]
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email: [email protected]
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github: zhengj2007
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label: Jie Zheng
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orcid: 0000-0002-2999-0103
@@ -7967,6 +7920,53 @@ ontologies:
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title: Types and effects of protein variations
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title: Variation Ontology
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tracker: http://variationontology.org/instructions.shtml
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- activity_status: inactive
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contact:
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email: [email protected]
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github: zhengj2007
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label: Jie Zheng
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orcid: 0000-0002-2999-0103
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depicted_by: https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png
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description: An ontology is developed to support Eukaryotic Pathogen, Host & Vector
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Genomics Resource (VEuPathDB; https://veupathdb.org).
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domain: organisms
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homepage: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
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id: eupath
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layout: ontology_detail
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license:
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label: CC BY 4.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
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url: http://creativecommons.org/licenses/by/4.0/
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ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
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preferredPrefix: EUPATH
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products:
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- id: eupath.owl
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ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
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publications:
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- id: https://doi.org/10.5281/zenodo.6685957
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title: Malaria study data integration and information retrieval based on OBO Foundry
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ontologies.
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repository: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
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tags:
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- functional genomics
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- population biology
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- clinical epidemiology
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- microbiomes
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title: VEuPathDB ontology
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tracker: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues
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usages:
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- description: The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen,
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Vector & Host Informatics Resources) covers both functional genomics and population
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biology.
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type: annotation and query
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user: https://veupathdb.org
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- description: The VEuPathDB ontology is used in the clinical epidemiology resources.
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type: annotation and query
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user: https://clinepidb.org
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- description: The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology
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platform for integrating, mining and analyzing microbiome experiments.
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type: annotation and query
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user: https://microbiomedb.org
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- activity_status: inactive
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build:
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method: obo2owl

‎registry/obo_prefixes.ttl

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@@ -48,7 +48,6 @@
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,[ sh:prefix "EMAPA" ; sh:namespace "http://purl.obolibrary.org/obo/EMAPA_"]
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,[ sh:prefix "ENVO" ; sh:namespace "http://purl.obolibrary.org/obo/ENVO_"]
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,[ sh:prefix "EPIO" ; sh:namespace "http://purl.obolibrary.org/obo/EPIO_"]
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,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
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,[ sh:prefix "ExO" ; sh:namespace "http://purl.obolibrary.org/obo/ExO_"]
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,[ sh:prefix "FAO" ; sh:namespace "http://purl.obolibrary.org/obo/FAO_"]
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,[ sh:prefix "FBbt" ; sh:namespace "http://purl.obolibrary.org/obo/FBbt_"]
@@ -188,6 +187,7 @@
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,[ sh:prefix "REX" ; sh:namespace "http://purl.obolibrary.org/obo/REX_"]
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,[ sh:prefix "SIBO" ; sh:namespace "http://purl.obolibrary.org/obo/SIBO_"]
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,[ sh:prefix "VariO" ; sh:namespace "http://purl.obolibrary.org/obo/VariO_"]
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,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
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,[ sh:prefix "FBbi" ; sh:namespace "http://purl.obolibrary.org/obo/FBbi_"]
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,[ sh:prefix "MFMO" ; sh:namespace "http://purl.obolibrary.org/obo/MFMO_"]
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,[ sh:prefix "MICRO" ; sh:namespace "http://purl.obolibrary.org/obo/MICRO_"]

‎registry/ontologies.jsonld

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@@ -2738,66 +2738,6 @@
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"title": "Epilepsy Ontology",
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"tracker": "https://github.com/SCAI-BIO/EpilepsyOntology/issues"
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},
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{
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"activity_status": "active",
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"contact": {
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"email": "[email protected]",
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"github": "zhengj2007",
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"label": "Jie Zheng",
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"orcid": "0000-0002-2999-0103"
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},
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"depicted_by": "https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png",
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"description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).",
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"domain": "organisms",
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"homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
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"id": "eupath",
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"layout": "ontology_detail",
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"license": {
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"label": "CC BY 4.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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"url": "http://creativecommons.org/licenses/by/4.0/"
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},
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"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl",
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"preferredPrefix": "EUPATH",
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"products": [
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{
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"id": "eupath.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl"
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}
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],
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"publications": [
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{
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"id": "https://doi.org/10.5281/zenodo.6685957",
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"title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies."
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}
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],
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"repository": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
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"tags": [
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"functional genomics",
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"population biology",
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"clinical epidemiology",
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"microbiomes"
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],
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"title": "VEuPathDB ontology",
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"tracker": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues",
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"usages": [
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{
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"description": "The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology.",
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"type": "annotation and query",
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"user": "https://veupathdb.org"
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},
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{
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"description": "The VEuPathDB ontology is used in the clinical epidemiology resources.",
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"type": "annotation and query",
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"user": "https://clinepidb.org"
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},
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{
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"description": "The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.",
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"type": "annotation and query",
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"user": "https://microbiomedb.org"
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}
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]
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},
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{
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"activity_status": "active",
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"contact": {
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"source_url": "http://purl.obolibrary.org/obo/iao.owl"
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},
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"contact": {
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"email": "[email protected]",
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"email": "[email protected]",
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"github": "zhengj2007",
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"label": "Jie Zheng",
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"orcid": "0000-0002-2999-0103"
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{
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"activity_status": "active",
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"contact": {
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"email": "[email protected]",
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"email": "[email protected]",
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"github": "zhengj2007",
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"label": "Jie Zheng",
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"orcid": "0000-0002-2999-0103"
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"title": "Variation Ontology",
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"tracker": "http://variationontology.org/instructions.shtml"
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},
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{
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"activity_status": "inactive",
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"contact": {
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"email": "[email protected]",
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"github": "zhengj2007",
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"label": "Jie Zheng",
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"orcid": "0000-0002-2999-0103"
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},
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"depicted_by": "https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png",
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"description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).",
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"domain": "organisms",
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"homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
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"id": "eupath",
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"layout": "ontology_detail",
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"license": {
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"label": "CC BY 4.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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"url": "http://creativecommons.org/licenses/by/4.0/"
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},
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"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl",
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"preferredPrefix": "EUPATH",
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"products": [
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{
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"id": "eupath.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl"
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}
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],
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"publications": [
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{
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"id": "https://doi.org/10.5281/zenodo.6685957",
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"title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies."
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}
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],
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"repository": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
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"tags": [
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"functional genomics",
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"population biology",
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"clinical epidemiology",
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"microbiomes"
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],
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"title": "VEuPathDB ontology",
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"tracker": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues",
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"usages": [
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{
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"description": "The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology.",
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"type": "annotation and query",
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"user": "https://veupathdb.org"
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},
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{
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"description": "The VEuPathDB ontology is used in the clinical epidemiology resources.",
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"type": "annotation and query",
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"user": "https://clinepidb.org"
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},
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{
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"description": "The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.",
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"type": "annotation and query",
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"user": "https://microbiomedb.org"
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}
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]
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},
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{
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"activity_status": "inactive",
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"build": {

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