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27 changes: 27 additions & 0 deletions body.tex
Original file line number Diff line number Diff line change
Expand Up @@ -165,6 +165,33 @@ \section*{Scientific Python ecosystem}
% we should have an example of how these tools may all be used in an
% example analysis. maybe one of the ones mentioned in the abstract?

The \tt{eht-imaging} library developed by the Event Horizon Telescope
collabortion relies on many components of the scientific Python ecosystem.
NumPy arrays were used to store and manipulate numerical data at every step
in the processing chain: from raw data through calibration and image
reconstruction.
Scipy was used to provide tools used in general image processing such as
filtering and image alignment, while scikit\_image provided higher-level
functionality such as edge filters and Hough transforms.
Other components of Scipy are used throughout the library, such as the
\tt{scipy.optimize} package for handling general optimization tasks.
Matplotlib is used for visualizing data throughout the analysis pipeline,
including the generation of the final image of the black hole.
% N.B. - most of this comes from introspecting the Image class defined in
% ehtim/image.py.

Tools for analyzing data from gravitational wave observatories such as LIGO
and Virgo are provided by the \tt{pycbc} package, which was used in the first
detection of gravitationaly waves \cite{abbott2016observation} and in
on-going analysis of data from LIGO and Virgo.
\tt{pycbc} make extensive use of the scientific Python ecosystem.
The time-series data from the interferometers are stored in NumPy arrays,
while the \tt{scipy.signal} is used to construct and apply filters to the
data.
Matplotlib is used to visualize data at all points along the analysis chain
including raw data from the instrumentation and the time-frequency
visualization of the ``chirp'' from the binary black hole merger.

Exposing array programming primitives, as well as the surrounding ecosystem of
tools, in Python---an interpreted language---creates an ideal environment for
interactive, exploratory data analysis where users may iteratively inspect,
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12 changes: 12 additions & 0 deletions references.bib
Original file line number Diff line number Diff line change
Expand Up @@ -2213,6 +2213,18 @@ @article{eht-imaging
publisher={IOP Publishing}
}

@article{abbott2016observation,
title={Observation of gravitational waves from a binary black hole merger},
author={Abbott, Benjamin P and Abbott, Richard and Abbott, TD and Abernathy, MR and Acernese, Fausto and Ackley, Kendall and Adams, Carl and Adams, Thomas and Addesso, Paolo and Adhikari, RX and others},
journal={Physical review letters},
volume={116},
number={6},
pages={061102},
year={2016},
publisher={APS}
}


@incollection{pytorch,
title = {PyTorch: An Imperative Style, High-Performance Deep Learning Library},
author = {Paszke, Adam and Gross, Sam and Massa, Francisco and Lerer, Adam and Bradbury, James and Chanan, Gregory and Killeen, Trevor and Lin, Zeming and Gimelshein, Natalia and Antiga, Luca and Desmaison, Alban and Kopf, Andreas and Yang, Edward and DeVito, Zachary and Raison, Martin and Tejani, Alykhan and Chilamkurthy, Sasank and Steiner, Benoit and Fang, Lu and Bai, Junjie and Chintala, Soumith},
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